Seminarji SB 2015/16: Difference between revisions
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Vir: knjiga [http://journal.frontiersin.org/researchtopic/2866/synthetic-biology-engineering-complexity-and-refactoring-cell-capabilities SYNTHETIC BIOLOGY: ENGINEERING COMPLEXITY AND REFACTORING CELL CAPABILITIES] | Vir: knjiga [http://journal.frontiersin.org/researchtopic/2866/synthetic-biology-engineering-complexity-and-refactoring-cell-capabilities SYNTHETIC BIOLOGY: ENGINEERING COMPLEXITY AND REFACTORING CELL CAPABILITIES] | ||
* Production of fatty acid-derived valuable chemicals in synthetic microbes (Maja Grdadolnik)<br> | * Production of fatty acid-derived valuable chemicals in synthetic microbes ([[Proizvodnja kemikalij iz derivatov maščobnih kislin s pomočjo sintetičnih mikroorganizmov]]) (Maja Grdadolnik)<br> | ||
* Optimization of the IPP precursor supply for the production of lycopene, decaprenoxanthin and astaxanthin by Corynebacterium glutamicum ([Optimizacija sinteze IPP kot prekursorja za produkcijo likopena, dekaprenoksantina in astaksantina v Corynebacterium glutamicum]) (Griša Prinčič)<br> | * Optimization of the IPP precursor supply for the production of lycopene, decaprenoxanthin and astaxanthin by Corynebacterium glutamicum ([[Optimizacija sinteze IPP kot prekursorja za produkcijo likopena, dekaprenoksantina in astaksantina v Corynebacterium glutamicum]]) (Griša Prinčič)<br> | ||
* Engineering sugar utilization and microbial tolerance toward lignocellulose conversion (Kim Potočnik) <br> | * Engineering sugar utilization and microbial tolerance toward lignocellulose conversion [http://wiki.fkkt.uni-lj.si/index.php/Konverzija_lignoceluloze_s_pomočjo_izkoriščanja_mikrobne_tolerance_in_inženiringa_sladkorjev] (Kim Potočnik) <br> | ||
* Cofactor engineering for enhancing the flux of metabolic pathways (Nastja Štemberger)<br> | * Cofactor engineering for enhancing the flux of metabolic pathways [[INŽENIRING KOFAKTORJEV ZA IZBOLJŠANJE METABOLIČNIH POTI]] (Nastja Štemberger)<br> | ||
* [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4354409/ Can the natural diversity of quorum-sensing advance synthetic biology?] ([[Ali lahko naravna diverziteta quorum sensinga pripomore k napredku v sintezni biologiji?]]) (Tina Snoj)<br> | * [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4354409/ Can the natural diversity of quorum-sensing advance synthetic biology?] ([[Ali lahko naravna diverziteta quorum sensinga pripomore k napredku v sintezni biologiji?]]) (Tina Snoj)<br> | ||
* Signal-to-noise ratio measures efficacy of biological computing devices and circuits (Jakob G. Lavrenčič)<br> | * [http://journal.frontiersin.org/article/10.3389/fbioe.2015.00093/full Signal-to-noise ratio measures efficacy of biological computing devices and circuits] ([[Določanje učinkovitosti bioloških naprav in vezij z razmerjem signal-šum]]) (Jakob G. Lavrenčič)<br> | ||
* A sense of balance: experimental investigation and modeling of a malonyl-CoA sensor in Escherichia coli (Ajda Rojc)<br> | * A sense of balance: experimental investigation and modeling of a malonyl-CoA sensor in Escherichia coli ([[Senzor za malonil-CoA v bakteriji Escherichia coli]]) (Ajda Rojc)<br> | ||
* New transposon tools tailored for metabolic engineering of Gram-negative microbial cell factories (Rok Razpotnik)<br> | * [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4211546/ New transposon tools tailored for metabolic engineering of Gram-negative microbial cell factories] ([[Metabolični inženiring gram-negativnih bakterij s transpozonskim sistemom]]) (Rok Razpotnik)<br> | ||
Vir: knjiga [http://journal.frontiersin.org/researchtopic/455/synthetic-biology-applications-in-industrial-microbiology SYNTHETIC BIOLOGY APPLICATIONS IN INDUSTRIAL MICROBIOLOGY] | Vir: knjiga [http://journal.frontiersin.org/researchtopic/455/synthetic-biology-applications-in-industrial-microbiology SYNTHETIC BIOLOGY APPLICATIONS IN INDUSTRIAL MICROBIOLOGY] | ||
* Recent Progress in Synthetic Biology for Microbial Production of C3–C10 Alcohols (Urška Rauter) | * Recent Progress in Synthetic Biology for Microbial Production of C3–C10 Alcohols (Urška Rauter) ([[Napredki v sintezni biologiji pri proizvodnji C3-C10 alkoholov v mikroorganizmih]]) | ||
* Visualizing Evolution in Real-Time Method for Strain Engineering (Samo Zakotnik) | * Visualizing Evolution in Real-Time Method for Strain Engineering ([[Vizualizacija evolucije v realnem času – metoda za sevno inženirstvo]]) (Samo Zakotnik) | ||
* Engineering Microbial Consortia to Enhance Biomining and Bioremediation (Maja Kostanjevec) | * [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367458/ Engineering Microbial Consortia to Enhance Biomining and Bioremediation] ([[Načrtovanje mikrobnih konzorcijev za izboljšanje biorudarstva in bioremediacije]]) (Maja Kostanjevec) | ||
* Engineering Microbial Chemical Factories to Produce Renewable “Biomonomers” (Nastja Pirman) | * Engineering Microbial Chemical Factories to Produce Renewable “Biomonomers” ([[Mikrobiološka proizvodnja obnovljivih biomonomerov in bioplastike]])(Nastja Pirman) | ||
* Application of Synthetic Biology in Cyanobacteria and Algae (Špela Tomaž) | * [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446811/ Application of Synthetic Biology in Cyanobacteria and Algae] ([[Uporaba sintezne biologije v cianobakterijah in algah]]) (Špela Tomaž) | ||
* Synthetic Feedback Loop Model for Increasing Microbial Biofuel Production Using a Biosensor (Jernej Pušnik) | * Synthetic Feedback Loop Model for Increasing Microbial Biofuel Production Using a Biosensor ([[Model s povratno zanko za povečanje mikrobne produkcije biogoriva z uporabo biosenzorja]])(Jernej Pušnik) | ||
* Balance of XYL1 and XYL2 Expression in Different Yeast Chassis for Improved xylose Fermentation (Monika Praznik) | * Balance of XYL1 and XYL2 Expression in Different Yeast Chassis for Improved xylose Fermentation ([[Ravnotežje med ekspresijo XYL1 in XYL2 v različnih šasijah kvasovk v povezavi s povečano fermentacijo ksiloze]]) (Monika Praznik) | ||
* Design and Development of Synthetic Microbial Platform Cells for Bioenergy (Erik Mršnik) | * [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630320/ Design and Development of Synthetic Microbial Platform Cells for Bioenergy] ([[Načrtovanje in razvijanje sintetičnih mikrobnih celičnih platform za pridobivanje bioenergije]])(Erik Mršnik) | ||
* [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3616241/ Microbial Production of Isoprenoids Enabled by Synthetic Biology] ([[Mikrobna produkcija izoprenoidov s sintezno biologijo]]) (Dominik Kert) | * [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3616241/ Microbial Production of Isoprenoids Enabled by Synthetic Biology] ([[Mikrobna produkcija izoprenoidov s sintezno biologijo]]) (Dominik Kert) | ||
* Chemical synthetic biology: a mini-review (Anka Hotko) | * Chemical synthetic biology: a mini-review ([[Kratki pregled kemijske sintezne biologije]]) (Anka Hotko) | ||
Seminarji iz preglednih člankov: | Seminarji iz preglednih člankov: | ||
* Towards engineering biological systems in a broader context (Aleksander Benčič) | * [http://www.sciencedirect.com/science/article/pii/S002228361500618X Towards engineering biological systems in a broader context] ([[Inženiring bioloških sistemov v širšem kontekstu]]) (Aleksander Benčič) | ||
* Synthetic biology: Novel approaches for microbiology (Daša Janeš) | * [http://revistes.iec.cat/index.php/IM/article/viewFile/139212/137876 Synthetic biology: Novel approaches for microbiology] ([[Sintezno biološki pristopi v mikrobiologiji]]) (Daša Janeš) | ||
* Tools and principles for microbial gene circuit engineering (Marko Radojković) | * [http://www.ncbi.nlm.nih.gov/pubmed/26463592 Tools and principles for microbial gene circuit engineering] ([[Orodja in načela za inženiring genskih vezij mikroorganizmov]]) (Marko Radojković) | ||
* Sensitive cells: enabling tools for static and dynamic control of microbial metabolic pathways (Katja Leben) | * Sensitive cells: enabling tools for static and dynamic control of microbial metabolic pathways ([[Dinamično uravnavanje (regulacija) metabolnih poti]]) (Katja Leben) | ||
* Chassis optimization as a cornerstone for the application of synthetic biology based strategies in microbial secondary metabolism (Jure Zabret) | * Chassis optimization as a cornerstone for the application of synthetic biology based strategies in microbial secondary metabolism ([[Oprimizacija šasij kot osnovni korak pri uporabi sintezno biološkega pristopa pri karakterizaciji mikrobnega sekundarnega metabolizma]]) (Jure Zabret) | ||
* Recent advances and opportunities in synthetic logic gates engineering in living cells (Monika Biasizzo) | * [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4571725/ Recent advances and opportunities in synthetic logic gates engineering in living cells] ([[Napredki v načrtovanju bioloških logičnih vrat v živih celicah]]) (Monika Biasizzo) | ||
* Programmable genetic circuits for pathway engineering (Urban Javoršek) | * Programmable genetic circuits for pathway engineering ([[Genetska vezja v metabolnem inženiringu]])(Urban Javoršek) | ||
* Better together: engineering and application of microbial symbioses (Nejc Petrišič) | * [http://web.media.mit.edu/~neri/MATTER.MEDIA/Publications/Better_together-_engineering_and_application_of_microbial_symbioses.pdf Better together: engineering and application of microbial symbioses] ([[V slogi je moč: načrtovanje in uporaba mikrobne simbioze]]) (Nejc Petrišič) | ||
* Synthetic biology for microbial production of lipid-based biofuels (Urška Pevec) | * Synthetic biology for microbial production of lipid-based biofuels ([[Produkcija lipidnih biogoriv s sintezno biologijo]]) (Urška Pevec) | ||
* Engineering Biosynthesis Mechanisms for Diversifying Polyhydroxyalkanoates (Mojca Banič) | * Engineering Biosynthesis Mechanisms for Diversifying Polyhydroxyalkanoates ([[Inženiring biosintetskih mehanizmov za raznolike polihidroksialkanoate]]) (Mojca Banič) | ||
* Synthetic biology of fungal natural products (Estera Merljak) | * [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4519758/pdf/fmicb-06-00775.pdf Synthetic biology of fungal natural products] ([[Sintezna biologija naravnih produktov (nitastih) gliv]]) (Estera Merljak) | ||
* Synthetic biology and biomimetic chemistry as converging technologies fostering a new generation of smart biosensors (Benjamin Bajželj) | * Synthetic biology and biomimetic chemistry as converging technologies fostering a new generation of smart biosensors ([[Sintezna biologija in biomimetika pri razvoju biosenzorjev]]) (Benjamin Bajželj) | ||
* How Synthetic Biology Would Reconsider Natural Bioluminescence and its Application (Ana Grom & Ana Unkovič) | * [http://splasho.com/blog/papers/Bioluminescence.pdf How Synthetic Biology Would Reconsider Natural Bioluminescence and its Application] ([[Uporaba naravne bioluminiscence v sintezni biologiji]]) (Ana Grom & Ana Unkovič) <br> | ||
* Synthetic Biology-Toward Therapeutic Solutions (Tanja Korpar) | * Synthetic Biology-Toward Therapeutic Solutions ([[Uporaba sintezne biologije v terapevtske namene]]) (Tanja Korpar) | ||
* Synthetically modified mRNA for efficient and fast human iPS cell generation and direct transdifferentiation to myoblasts (Mirjana Malnar) | * [http://www.sciencedirect.com/science/article/pii/S0006291X15306197 Synthetically modified mRNA for efficient and fast human iPS cell generation and direct transdifferentiation to myoblasts] ([[Učinkovita in hitra priprava človeških iPS celic in neposredna transdiferenciacija v mioblaste s sintetično modificirano mRNA]]) (Mirjana Malnar) | ||
* Mammalian synthetic biology: emerging medical applications (Maša | * Mammalian synthetic biology: emerging medical applications([[Sintezna biologija sesalcev in medicinske aplikacije]]) ( Maša Mirkoviić) | ||
* | * Biology devices and circuits for RNA-based ‘smart vaccines’: a propositional review ([[Biološke naprave in vezja za pripravo pametnih cepiv na osnovi RNA]])(Monika Škrjanc) | ||
Latest revision as of 08:45, 18 January 2016
Seminarji iz Sintezne biologije v študijskem letu 2015/16 so:
Vir: knjiga SYNTHETIC BIOLOGY: ENGINEERING COMPLEXITY AND REFACTORING CELL CAPABILITIES
- Production of fatty acid-derived valuable chemicals in synthetic microbes (Proizvodnja kemikalij iz derivatov maščobnih kislin s pomočjo sintetičnih mikroorganizmov) (Maja Grdadolnik)
- Optimization of the IPP precursor supply for the production of lycopene, decaprenoxanthin and astaxanthin by Corynebacterium glutamicum (Optimizacija sinteze IPP kot prekursorja za produkcijo likopena, dekaprenoksantina in astaksantina v Corynebacterium glutamicum) (Griša Prinčič)
- Engineering sugar utilization and microbial tolerance toward lignocellulose conversion [1] (Kim Potočnik)
- Cofactor engineering for enhancing the flux of metabolic pathways INŽENIRING KOFAKTORJEV ZA IZBOLJŠANJE METABOLIČNIH POTI (Nastja Štemberger)
- Can the natural diversity of quorum-sensing advance synthetic biology? (Ali lahko naravna diverziteta quorum sensinga pripomore k napredku v sintezni biologiji?) (Tina Snoj)
- Signal-to-noise ratio measures efficacy of biological computing devices and circuits (Določanje učinkovitosti bioloških naprav in vezij z razmerjem signal-šum) (Jakob G. Lavrenčič)
- A sense of balance: experimental investigation and modeling of a malonyl-CoA sensor in Escherichia coli (Senzor za malonil-CoA v bakteriji Escherichia coli) (Ajda Rojc)
- New transposon tools tailored for metabolic engineering of Gram-negative microbial cell factories (Metabolični inženiring gram-negativnih bakterij s transpozonskim sistemom) (Rok Razpotnik)
Vir: knjiga SYNTHETIC BIOLOGY APPLICATIONS IN INDUSTRIAL MICROBIOLOGY
- Recent Progress in Synthetic Biology for Microbial Production of C3–C10 Alcohols (Urška Rauter) (Napredki v sintezni biologiji pri proizvodnji C3-C10 alkoholov v mikroorganizmih)
- Visualizing Evolution in Real-Time Method for Strain Engineering (Vizualizacija evolucije v realnem času – metoda za sevno inženirstvo) (Samo Zakotnik)
- Engineering Microbial Consortia to Enhance Biomining and Bioremediation (Načrtovanje mikrobnih konzorcijev za izboljšanje biorudarstva in bioremediacije) (Maja Kostanjevec)
- Engineering Microbial Chemical Factories to Produce Renewable “Biomonomers” (Mikrobiološka proizvodnja obnovljivih biomonomerov in bioplastike)(Nastja Pirman)
- Application of Synthetic Biology in Cyanobacteria and Algae (Uporaba sintezne biologije v cianobakterijah in algah) (Špela Tomaž)
- Synthetic Feedback Loop Model for Increasing Microbial Biofuel Production Using a Biosensor (Model s povratno zanko za povečanje mikrobne produkcije biogoriva z uporabo biosenzorja)(Jernej Pušnik)
- Balance of XYL1 and XYL2 Expression in Different Yeast Chassis for Improved xylose Fermentation (Ravnotežje med ekspresijo XYL1 in XYL2 v različnih šasijah kvasovk v povezavi s povečano fermentacijo ksiloze) (Monika Praznik)
- Design and Development of Synthetic Microbial Platform Cells for Bioenergy (Načrtovanje in razvijanje sintetičnih mikrobnih celičnih platform za pridobivanje bioenergije)(Erik Mršnik)
- Microbial Production of Isoprenoids Enabled by Synthetic Biology (Mikrobna produkcija izoprenoidov s sintezno biologijo) (Dominik Kert)
- Chemical synthetic biology: a mini-review (Kratki pregled kemijske sintezne biologije) (Anka Hotko)
Seminarji iz preglednih člankov:
- Towards engineering biological systems in a broader context (Inženiring bioloških sistemov v širšem kontekstu) (Aleksander Benčič)
- Synthetic biology: Novel approaches for microbiology (Sintezno biološki pristopi v mikrobiologiji) (Daša Janeš)
- Tools and principles for microbial gene circuit engineering (Orodja in načela za inženiring genskih vezij mikroorganizmov) (Marko Radojković)
- Sensitive cells: enabling tools for static and dynamic control of microbial metabolic pathways (Dinamično uravnavanje (regulacija) metabolnih poti) (Katja Leben)
- Chassis optimization as a cornerstone for the application of synthetic biology based strategies in microbial secondary metabolism (Oprimizacija šasij kot osnovni korak pri uporabi sintezno biološkega pristopa pri karakterizaciji mikrobnega sekundarnega metabolizma) (Jure Zabret)
- Recent advances and opportunities in synthetic logic gates engineering in living cells (Napredki v načrtovanju bioloških logičnih vrat v živih celicah) (Monika Biasizzo)
- Programmable genetic circuits for pathway engineering (Genetska vezja v metabolnem inženiringu)(Urban Javoršek)
- Better together: engineering and application of microbial symbioses (V slogi je moč: načrtovanje in uporaba mikrobne simbioze) (Nejc Petrišič)
- Synthetic biology for microbial production of lipid-based biofuels (Produkcija lipidnih biogoriv s sintezno biologijo) (Urška Pevec)
- Engineering Biosynthesis Mechanisms for Diversifying Polyhydroxyalkanoates (Inženiring biosintetskih mehanizmov za raznolike polihidroksialkanoate) (Mojca Banič)
- Synthetic biology of fungal natural products (Sintezna biologija naravnih produktov (nitastih) gliv) (Estera Merljak)
- Synthetic biology and biomimetic chemistry as converging technologies fostering a new generation of smart biosensors (Sintezna biologija in biomimetika pri razvoju biosenzorjev) (Benjamin Bajželj)
- How Synthetic Biology Would Reconsider Natural Bioluminescence and its Application (Uporaba naravne bioluminiscence v sintezni biologiji) (Ana Grom & Ana Unkovič)
- Synthetic Biology-Toward Therapeutic Solutions (Uporaba sintezne biologije v terapevtske namene) (Tanja Korpar)
- Synthetically modified mRNA for efficient and fast human iPS cell generation and direct transdifferentiation to myoblasts (Učinkovita in hitra priprava človeških iPS celic in neposredna transdiferenciacija v mioblaste s sintetično modificirano mRNA) (Mirjana Malnar)
- Mammalian synthetic biology: emerging medical applications(Sintezna biologija sesalcev in medicinske aplikacije) ( Maša Mirkoviić)
- Biology devices and circuits for RNA-based ‘smart vaccines’: a propositional review (Biološke naprave in vezja za pripravo pametnih cepiv na osnovi RNA)(Monika Škrjanc)
