Seminarji SB 2015/16

Seminarji iz Sintezne biologije v študijskem letu 2015/16 so:

Vir: knjiga SYNTHETIC BIOLOGY: ENGINEERING COMPLEXITY AND REFACTORING CELL CAPABILITIES

• Production of fatty acid-derived valuable chemicals in synthetic microbes (Proizvodnja kemikalij iz derivatov maščobnih kislin s pomočjo sintetičnih mikroorganizmov) (Maja Grdadolnik)
  
• Optimization of the IPP precursor supply for the production of lycopene, decaprenoxanthin and astaxanthin by Corynebacterium glutamicum (Optimizacija sinteze IPP kot prekursorja za produkcijo likopena, dekaprenoksantina in astaksantina v Corynebacterium glutamicum) (Griša Prinčič)
  
• Engineering sugar utilization and microbial tolerance toward lignocellulose conversion [1] (Kim Potočnik)
  
• Cofactor engineering for enhancing the flux of metabolic pathways INŽENIRING KOFAKTORJEV ZA IZBOLJŠANJE METABOLIČNIH POTI (Nastja Štemberger)
  
• Can the natural diversity of quorum-sensing advance synthetic biology? (Ali lahko naravna diverziteta quorum sensinga pripomore k napredku v sintezni biologiji?) (Tina Snoj)
  
• Signal-to-noise ratio measures efficacy of biological computing devices and circuits (Določanje učinkovitosti bioloških naprav in vezij z razmerjem signal-šum) (Jakob G. Lavrenčič)
  
• A sense of balance: experimental investigation and modeling of a malonyl-CoA sensor in Escherichia coli (Senzor za malonil-CoA v bakteriji Escherichia coli) (Ajda Rojc)
  
• New transposon tools tailored for metabolic engineering of Gram-negative microbial cell factories (Metabolični inženiring gram-negativnih bakterij s transpozonskim sistemom) (Rok Razpotnik)
  

Vir: knjiga SYNTHETIC BIOLOGY APPLICATIONS IN INDUSTRIAL MICROBIOLOGY

• Recent Progress in Synthetic Biology for Microbial Production of C3–C10 Alcohols (Urška Rauter) (Napredki v sintezni biologiji pri proizvodnji C3-C10 alkoholov v mikroorganizmih)
• Visualizing Evolution in Real-Time Method for Strain Engineering (Vizualizacija evolucije v realnem času – metoda za sevno inženirstvo) (Samo Zakotnik)
• Engineering Microbial Consortia to Enhance Biomining and Bioremediation (Načrtovanje mikrobnih konzorcijev za izboljšanje biorudarstva in bioremediacije) (Maja Kostanjevec)
• Engineering Microbial Chemical Factories to Produce Renewable “Biomonomers” (Mikrobiološka proizvodnja obnovljivih biomonomerov in bioplastike)(Nastja Pirman)
• Application of Synthetic Biology in Cyanobacteria and Algae (Uporaba sintezne biologije v cianobakterijah in algah) (Špela Tomaž)
• Synthetic Feedback Loop Model for Increasing Microbial Biofuel Production Using a Biosensor (Jernej Pušnik)
• Balance of XYL1 and XYL2 Expression in Different Yeast Chassis for Improved xylose Fermentation (Ravnotežje med ekspresijo XYL1 in XYL2 v različnih šasijah kvasovk v povezavi s povečano fermentacijo ksiloze) (Monika Praznik)
• Design and Development of Synthetic Microbial Platform Cells for Bioenergy (Načrtovanje in razvijanje sintetičnih mikrobnih celičnih platform za pridobivanje bioenergije)(Erik Mršnik)
• Microbial Production of Isoprenoids Enabled by Synthetic Biology (Mikrobna produkcija izoprenoidov s sintezno biologijo) (Dominik Kert)
• Chemical synthetic biology: a mini-review (Kratki pregled kemijske sintezne biologije) (Anka Hotko)

Seminarji iz preglednih člankov:

• Towards engineering biological systems in a broader context (Inženiring bioloških sistemov v širšem kontekstu) (Aleksander Benčič)
• Synthetic biology: Novel approaches for microbiology (Sintezno biološki pristopi v mikrobiologiji) (Daša Janeš)
• Tools and principles for microbial gene circuit engineering (Marko Radojković)
• Sensitive cells: enabling tools for static and dynamic control of microbial metabolic pathways (Dinamično uravnavanje (regulacija) metabolnih poti) (Katja Leben)
• Chassis optimization as a cornerstone for the application of synthetic biology based strategies in microbial secondary metabolism (Oprimizacija šasij kot osnovni korak pri uporabi sintezno biološkega pristopa pri karakterizaciji mikrobnega sekundarnega metabolizma) (Jure Zabret)
• Recent advances and opportunities in synthetic logic gates engineering in living cells (Napredki v načrtovanju bioloških logičnih vrat v živih celicah) (Monika Biasizzo)
• Programmable genetic circuits for pathway engineering (Urban Javoršek)
• Better together: engineering and application of microbial symbioses (V slogi je moč: načrtovanje in uporaba mikrobne simbioze) (Nejc Petrišič)
• Synthetic biology for microbial production of lipid-based biofuels (Produkcija lipidnih biogoriv s sintezno biologijo) (Urška Pevec)
• Engineering Biosynthesis Mechanisms for Diversifying Polyhydroxyalkanoates (Inženiring biosintetskih mehanizmov za raznolike polihidroksialkanoate) (Mojca Banič)
• Synthetic biology of fungal natural products (Sintezna biologija naravnih produktov (nitastih) gliv) (Estera Merljak)
• Synthetic biology and biomimetic chemistry as converging technologies fostering a new generation of smart biosensors (Sintezna biologija in biomimetika pri razvoju biosenzorjev) (Benjamin Bajželj)
• How Synthetic Biology Would Reconsider Natural Bioluminescence and its Application (Ana Grom & Ana Unkovič)
  
• Synthetic Biology-Toward Therapeutic Solutions (Tanja Korpar)
• Synthetically modified mRNA for efficient and fast human iPS cell generation and direct transdifferentiation to myoblasts (Mirjana Malnar)
• Mammalian synthetic biology: emerging medical applications(Sintezna biologija sesalcev in medicinske aplikacije) ( Maša Mirkoviić)

biology devices and circuits for RNA-based ‘smart vaccines’: a propositional review	(Monika Škrjanc)